Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH3P22223 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH3P22223 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 MRPL20P1-201ENST00000400819 433 ntBASIC16.57■□□□□ 0.24
CDH3P22223 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH3P22223 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH3P22223 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH3P22223 AC064836.3-201ENST00000607928 673 ntBASIC16.57■□□□□ 0.24
CDH3P22223 AC023511.2-201ENST00000618803 211 ntBASIC16.57■□□□□ 0.24
CDH3P22223 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH3P22223 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
CDH3P22223 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH3P22223 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CDH3P22223 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CDH3P22223 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CDH3P22223 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 AC008741.2-201ENST00000612792 3115 ntBASIC16.56■□□□□ 0.24
CDH3P22223 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CDH3P22223 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CDH3P22223 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.56■□□□□ 0.24
CDH3P22223 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.56■□□□□ 0.24
CDH3P22223 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.56■□□□□ 0.24
CDH3P22223 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.56■□□□□ 0.24
CDH3P22223 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.56■□□□□ 0.24
CDH3P22223 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CDH3P22223 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
CDH3P22223 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDH3P22223 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH3P22223 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CDH3P22223 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH3P22223 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.55■□□□□ 0.24
CDH3P22223 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms