Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 SLC22A20-204ENST00000530038 1673 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.13■□□□□ 0.33
NFKB1P19838 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.13■□□□□ 0.33
NFKB1P19838 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 AC098831.1-202ENST00000438821 336 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.13■□□□□ 0.33
NFKB1P19838 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.13■□□□□ 0.33
NFKB1P19838 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 AP001005.1-201ENST00000571755 1248 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 OR7E47P-204ENST00000575924 449 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 AC091167.2-201ENST00000579581 588 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.13■□□□□ 0.33
NFKB1P19838 AC116407.3-201ENST00000623905 1129 ntBASIC17.13■□□□□ 0.33
NFKB1P19838 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NFKB1P19838 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.13■□□□□ 0.33
NFKB1P19838 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NFKB1P19838 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.13■□□□□ 0.33
NFKB1P19838 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NFKB1P19838 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NFKB1P19838 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.13■□□□□ 0.33
NFKB1P19838 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 SNX33P1-201ENST00000592116 1762 ntBASIC17.12■□□□□ 0.33
NFKB1P19838 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.12■□□□□ 0.33
NFKB1P19838 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
NFKB1P19838 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 AC006538.1-201ENST00000567905 1585 ntBASIC17.12■□□□□ 0.33
NFKB1P19838 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 MRPL20P1-201ENST00000400819 433 ntBASIC17.12■□□□□ 0.33
NFKB1P19838 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.12■□□□□ 0.33
NFKB1P19838 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.12■□□□□ 0.33
NFKB1P19838 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 AC131009.4-201ENST00000624048 1740 ntBASIC17.12■□□□□ 0.33
NFKB1P19838 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NFKB1P19838 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.12■□□□□ 0.33
NFKB1P19838 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NFKB1P19838 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.11■□□□□ 0.33
NFKB1P19838 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 HLA-J-202ENST00000469281 1241 ntBASIC17.11■□□□□ 0.33
NFKB1P19838 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.11■□□□□ 0.33
NFKB1P19838 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.11■□□□□ 0.33
NFKB1P19838 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NFKB1P19838 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.11■□□□□ 0.33
NFKB1P19838 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 AL139011.1-202ENST00000642063 584 ntBASIC17.11■□□□□ 0.33
NFKB1P19838 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NFKB1P19838 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms