Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
ERCC3P19447 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.47■□□□□ 0.71
ERCC3P19447 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.47■□□□□ 0.71
ERCC3P19447 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.47■□□□□ 0.71
ERCC3P19447 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.47■□□□□ 0.71
ERCC3P19447 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ERCC3P19447 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.47■□□□□ 0.71
ERCC3P19447 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.47■□□□□ 0.71
ERCC3P19447 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ERCC3P19447 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.47■□□□□ 0.71
ERCC3P19447 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.47■□□□□ 0.71
ERCC3P19447 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ERCC3P19447 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
ERCC3P19447 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC3P19447 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ERCC3P19447 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
ERCC3P19447 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
ERCC3P19447 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
ERCC3P19447 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.46■□□□□ 0.71
ERCC3P19447 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 COX20P2-201ENST00000452636 358 ntBASIC19.46■□□□□ 0.71
ERCC3P19447 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.46■□□□□ 0.71
ERCC3P19447 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC3P19447 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.46■□□□□ 0.71
ERCC3P19447 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC3P19447 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.46■□□□□ 0.71
ERCC3P19447 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.46■□□□□ 0.71
ERCC3P19447 AL161645.1-201ENST00000622716 1255 ntBASIC19.46■□□□□ 0.71
ERCC3P19447 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC3P19447 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.46■□□□□ 0.71
ERCC3P19447 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
ERCC3P19447 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ERCC3P19447 AC012569.1-201ENST00000591191 1524 ntBASIC19.46■□□□□ 0.71
ERCC3P19447 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ERCC3P19447 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
ERCC3P19447 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
ERCC3P19447 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ERCC3P19447 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
ERCC3P19447 AC092474.2-201ENST00000424288 719 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 GPS2P2-201ENST00000430745 888 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 SPCS2P4-201ENST00000436160 681 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 CNN2P2-201ENST00000443536 909 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 CNN2P3-201ENST00000450201 906 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.45■□□□□ 0.7
ERCC3P19447 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.45■□□□□ 0.7
ERCC3P19447 MIR4745-201ENST00000577608 62 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 AL009183.1-201ENST00000603760 355 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 AL136317.3-201ENST00000618497 906 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 AC011270.2-201ENST00000624293 2550 ntBASIC19.45■□□□□ 0.7
ERCC3P19447 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
ERCC3P19447 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.45■□□□□ 0.7
ERCC3P19447 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
ERCC3P19447 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ERCC3P19447 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
ERCC3P19447 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC3P19447 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC3P19447 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.44■□□□□ 0.7
ERCC3P19447 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
ERCC3P19447 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC3P19447 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ERCC3P19447 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.44■□□□□ 0.7
ERCC3P19447 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.44■□□□□ 0.7
ERCC3P19447 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms