Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A2P12110 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL6A2P12110 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A2P12110 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL6A2P12110 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL6A2P12110 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A2P12110 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL6A2P12110 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.67■□□□□ 0.26
COL6A2P12110 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL6A2P12110 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A2P12110 NUS1P2-201ENST00000417358 873 ntBASIC16.67■□□□□ 0.26
COL6A2P12110 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.67■□□□□ 0.26
COL6A2P12110 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 AC106795.1-205ENST00000512851 1056 ntBASIC16.67■□□□□ 0.26
COL6A2P12110 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.67■□□□□ 0.26
COL6A2P12110 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 AL589182.2-201ENST00000619332 1049 ntBASIC16.67■□□□□ 0.26
COL6A2P12110 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A2P12110 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A2P12110 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A2P12110 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
COL6A2P12110 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A2P12110 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A2P12110 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A2P12110 AP001269.4-201ENST00000609611 512 ntBASIC16.66■□□□□ 0.26
COL6A2P12110 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.66■□□□□ 0.26
COL6A2P12110 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A2P12110 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL6A2P12110 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL6A2P12110 GGT3P-204ENST00000453783 1664 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms