Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.25■□□□□ 0.51
RNF40O75150 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF40O75150 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF40O75150 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF40O75150 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.25■□□□□ 0.51
RNF40O75150 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.25■□□□□ 0.51
RNF40O75150 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.24■□□□□ 0.51
RNF40O75150 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
RNF40O75150 AC092068.3-201ENST00000587894 2016 ntBASIC18.24■□□□□ 0.51
RNF40O75150 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF40O75150 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 FAM220CP-201ENST00000395253 831 ntBASIC18.24■□□□□ 0.51
RNF40O75150 MED15P5-201ENST00000423150 992 ntBASIC18.24■□□□□ 0.51
RNF40O75150 PGAM5P1-201ENST00000518923 814 ntBASIC18.24■□□□□ 0.51
RNF40O75150 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.24■□□□□ 0.51
RNF40O75150 AC012640.2-201ENST00000561606 901 ntBASIC18.24■□□□□ 0.51
RNF40O75150 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF40O75150 AC140113.2-201ENST00000604370 208 ntBASIC18.24■□□□□ 0.51
RNF40O75150 AC025062.2-201ENST00000605477 670 ntBASIC18.24■□□□□ 0.51
RNF40O75150 AC027601.4-201ENST00000611259 610 ntBASIC18.24■□□□□ 0.51
RNF40O75150 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.24■□□□□ 0.51
RNF40O75150 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.24■□□□□ 0.51
RNF40O75150 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF40O75150 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.24■□□□□ 0.51
RNF40O75150 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF40O75150 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
RNF40O75150 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 CYP2T1P-202ENST00000641596 2535 ntBASIC18.23■□□□□ 0.51
RNF40O75150 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 AL139288.1-201ENST00000623748 933 ntBASIC18.23■□□□□ 0.51
RNF40O75150 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RNF40O75150 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 AC105917.1-201ENST00000506637 2539 ntBASIC18.23■□□□□ 0.51
RNF40O75150 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF40O75150 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF40O75150 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF40O75150 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF40O75150 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF40O75150 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF40O75150 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms