Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC28.32■■■□□ 2.12
CUX2O14529 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC28.32■■■□□ 2.12
CUX2O14529 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC28.32■■■□□ 2.12
CUX2O14529 PODN-203ENST00000395871 2744 ntTSL 5 BASIC28.32■■■□□ 2.12
CUX2O14529 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC28.32■■■□□ 2.12
CUX2O14529 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC28.32■■■□□ 2.12
CUX2O14529 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC28.32■■■□□ 2.12
CUX2O14529 ADM-202ENST00000524948 584 ntTSL 2 BASIC28.32■■■□□ 2.12
CUX2O14529 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC28.32■■■□□ 2.12
CUX2O14529 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC28.32■■■□□ 2.12
CUX2O14529 MIR3619-201ENST00000579667 83 ntBASIC28.32■■■□□ 2.12
CUX2O14529 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC28.32■■■□□ 2.12
CUX2O14529 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC28.32■■■□□ 2.12
CUX2O14529 TNXA-203ENST00000507684 2038 ntBASIC28.32■■■□□ 2.12
CUX2O14529 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX2O14529 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX2O14529 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
CUX2O14529 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CUX2O14529 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CUX2O14529 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC28.31■■■□□ 2.12
CUX2O14529 AC091046.1-201ENST00000331871 207 ntBASIC28.31■■■□□ 2.12
CUX2O14529 ACTG1P3-201ENST00000431775 1114 ntBASIC28.31■■■□□ 2.12
CUX2O14529 RN7SL769P-201ENST00000469386 295 ntBASIC28.31■■■□□ 2.12
CUX2O14529 LINC01451-201ENST00000623792 534 ntBASIC28.31■■■□□ 2.12
CUX2O14529 AL033527.5-202ENST00000641632 1098 ntBASIC28.31■■■□□ 2.12
CUX2O14529 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC28.31■■■□□ 2.12
CUX2O14529 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC28.31■■■□□ 2.12
CUX2O14529 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX2O14529 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX2O14529 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CUX2O14529 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
CUX2O14529 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
CUX2O14529 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
CUX2O14529 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC28.3■■■□□ 2.12
CUX2O14529 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC28.3■■■□□ 2.12
CUX2O14529 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC28.3■■■□□ 2.12
CUX2O14529 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC28.3■■■□□ 2.12
CUX2O14529 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
CUX2O14529 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX2O14529 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC28.29■■■□□ 2.12
CUX2O14529 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 LYSMD4-203ENST00000378904 2122 ntBASIC28.29■■■□□ 2.12
CUX2O14529 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
CUX2O14529 OLR1-203ENST00000432556 950 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX2O14529 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC28.29■■■□□ 2.12
CUX2O14529 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
CUX2O14529 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX2O14529 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
CUX2O14529 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX2O14529 AC098818.2-201ENST00000564925 2320 ntBASIC28.29■■■□□ 2.12
CUX2O14529 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 MPV17-204ENST00000399052 749 ntTSL 4 BASIC28.28■■■□□ 2.12
CUX2O14529 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC28.28■■■□□ 2.12
CUX2O14529 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC28.28■■■□□ 2.12
CUX2O14529 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 AL008638.5-201ENST00000623814 1298 ntBASIC28.28■■■□□ 2.12
CUX2O14529 AC244452.3-201ENST00000636814 210 ntBASIC28.28■■■□□ 2.12
CUX2O14529 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
CUX2O14529 AL138781.2-201ENST00000617896 1843 ntBASIC28.28■■■□□ 2.12
CUX2O14529 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
CUX2O14529 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
CUX2O14529 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC28.28■■■□□ 2.12
CUX2O14529 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX2O14529 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC28.27■■■□□ 2.12
CUX2O14529 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 PTPA-217ENST00000434095 870 ntTSL 2 BASIC28.27■■■□□ 2.12
CUX2O14529 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC28.27■■■□□ 2.12
CUX2O14529 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC28.27■■■□□ 2.12
CUX2O14529 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC28.27■■■□□ 2.12
CUX2O14529 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms