Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 AC010654.1-201ENST00000615722 808 ntBASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 AC006277.1-201ENST00000624348 1610 ntBASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4BQ9Y4P1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 UBALD1-205ENST00000590891 2641 ntBASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 PRSS29P-201ENST00000440800 595 ntBASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.96■□□□□ 0.15
ATG4BQ9Y4P1 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 OR6D1P-203ENST00000641209 4860 ntBASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 PCDHA14-201ENST00000506751 2298 ntBASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4BQ9Y4P1 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 SLC22A20-204ENST00000530038 1673 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 PMS2P1-201ENST00000431037 1228 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 VN2R19P-201ENST00000442399 1052 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 SLC25A1P1-201ENST00000528351 927 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 MIR4492-201ENST00000581627 80 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AC013467.2-201ENST00000605472 835 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 Z83851.2-201ENST00000609564 659 ntBASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
ATG4BQ9Y4P1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 AC104109.2-201ENST00000602919 1418 ntBASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
ATG4BQ9Y4P1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms