Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMD1Q9UGP4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 AC004890.2-204ENST00000481968 304 ntBASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 SPDYE22P-201ENST00000582158 798 ntBASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
LIMD1Q9UGP4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 RN7SL692P-201ENST00000464677 288 ntBASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 AC134043.2-201ENST00000624206 2238 ntBASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMD1Q9UGP4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 MRPS18AP1-201ENST00000414458 589 ntBASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 AC027369.6-201ENST00000525520 931 ntBASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 AC005412.3-201ENST00000580309 715 ntBASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 REXO1L11P-201ENST00000620964 1927 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms