Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 ABCD1P5-201ENST00000445663 754 ntBASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.26■□□□□ 0.35
TRIM56Q9BRZ2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 POM121L3P-201ENST00000419331 1163 ntBASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 HCG4P8-203ENST00000443049 980 ntBASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM56Q9BRZ2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 SIGLEC30P-201ENST00000455569 941 ntBASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 BX005266.1-201ENST00000473402 457 ntBASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 AL732292.2-201ENST00000609649 430 ntBASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM56Q9BRZ2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms