Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.91■□□□□ 0.14
PTCHD1Q96NR3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 AC002347.1-201ENST00000569543 541 ntBASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ACTL9-202ENST00000612068 1252 ntBASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 AC099398.1-201ENST00000567919 2776 ntBASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTCHD1Q96NR3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 TOP3BP1-201ENST00000420768 1380 ntBASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 KRT8P49-201ENST00000604166 1432 ntBASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 AC025580.3-201ENST00000617932 1424 ntBASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 AL513190.1-201ENST00000621254 727 ntBASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 AC092865.6-201ENST00000642101 219 ntBASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTCHD1Q96NR3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms