Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 PRSS29P-201ENST00000440800 595 ntBASIC13.05□□□□□ -0.32
CCDC140Q96MF4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 AC079776.4-201ENST00000511039 504 ntBASIC13.05□□□□□ -0.32
CCDC140Q96MF4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC140Q96MF4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 HLA-J-202ENST00000469281 1241 ntBASIC13.04□□□□□ -0.32
CCDC140Q96MF4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 Z83851.2-201ENST00000609564 659 ntBASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ACTL9-202ENST00000612068 1252 ntBASIC13.04□□□□□ -0.32
CCDC140Q96MF4 AL139011.1-202ENST00000642063 584 ntBASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 SNX33P1-201ENST00000592116 1762 ntBASIC13.04□□□□□ -0.32
CCDC140Q96MF4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CCDC140Q96MF4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 AC006538.1-201ENST00000567905 1585 ntBASIC13.03□□□□□ -0.32
CCDC140Q96MF4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.03□□□□□ -0.32
CCDC140Q96MF4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 CYP2A7P1-201ENST00000595391 815 ntBASIC13.03□□□□□ -0.32
CCDC140Q96MF4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms