Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.68■□□□□ 0.58
HPS3Q969F9 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HPS3Q969F9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.68■□□□□ 0.58
HPS3Q969F9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HPS3Q969F9 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.68■□□□□ 0.58
HPS3Q969F9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.68■□□□□ 0.58
HPS3Q969F9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.68■□□□□ 0.58
HPS3Q969F9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.68■□□□□ 0.58
HPS3Q969F9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HPS3Q969F9 MPDU1-223ENST00000582151 728 ntBASIC18.68■□□□□ 0.58
HPS3Q969F9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.68■□□□□ 0.58
HPS3Q969F9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.68■□□□□ 0.58
HPS3Q969F9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.68■□□□□ 0.58
HPS3Q969F9 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.68■□□□□ 0.58
HPS3Q969F9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.68■□□□□ 0.58
HPS3Q969F9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 RPS2P28-201ENST00000314255 741 ntBASIC18.67■□□□□ 0.58
HPS3Q969F9 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.67■□□□□ 0.58
HPS3Q969F9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.67■□□□□ 0.58
HPS3Q969F9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 MIR4492-201ENST00000581627 80 ntBASIC18.67■□□□□ 0.58
HPS3Q969F9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.67■□□□□ 0.58
HPS3Q969F9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
HPS3Q969F9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
HPS3Q969F9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HPS3Q969F9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS3Q969F9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS3Q969F9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS3Q969F9 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HPS3Q969F9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
HPS3Q969F9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.66■□□□□ 0.58
HPS3Q969F9 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS3Q969F9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
HPS3Q969F9 UNC93B6-202ENST00000528242 690 ntBASIC18.66■□□□□ 0.58
HPS3Q969F9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.66■□□□□ 0.58
HPS3Q969F9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.66■□□□□ 0.58
HPS3Q969F9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.66■□□□□ 0.58
HPS3Q969F9 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS3Q969F9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HPS3Q969F9 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS3Q969F9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS3Q969F9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS3Q969F9 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS3Q969F9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms