Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ERCC4Q92889 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC4Q92889 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC4Q92889 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.19■□□□□ 0.66
ERCC4Q92889 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.19■□□□□ 0.66
ERCC4Q92889 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ERCC4Q92889 AL162727.3-201ENST00000635661 2787 ntBASIC19.19■□□□□ 0.66
ERCC4Q92889 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ERCC4Q92889 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.19■□□□□ 0.66
ERCC4Q92889 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.18■□□□□ 0.66
ERCC4Q92889 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ERCC4Q92889 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ERCC4Q92889 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ERCC4Q92889 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC4Q92889 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC4Q92889 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ERCC4Q92889 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.18■□□□□ 0.66
ERCC4Q92889 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
ERCC4Q92889 AP000867.4-201ENST00000641616 219 ntBASIC19.18■□□□□ 0.66
ERCC4Q92889 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 LINC00554-201ENST00000564841 3011 ntBASIC19.18■□□□□ 0.66
ERCC4Q92889 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ERCC4Q92889 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
ERCC4Q92889 IER3-202ENST00000376377 1350 ntBASIC19.18■□□□□ 0.66
ERCC4Q92889 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ERCC4Q92889 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.17■□□□□ 0.66
ERCC4Q92889 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.17■□□□□ 0.66
ERCC4Q92889 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
ERCC4Q92889 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AC097637.2-201ENST00000624096 1997 ntBASIC19.17■□□□□ 0.66
ERCC4Q92889 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.17■□□□□ 0.66
ERCC4Q92889 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.17■□□□□ 0.66
ERCC4Q92889 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AC087388.1-201ENST00000571370 1112 ntBASIC19.17■□□□□ 0.66
ERCC4Q92889 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.17■□□□□ 0.66
ERCC4Q92889 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.17■□□□□ 0.66
ERCC4Q92889 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
ERCC4Q92889 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ERCC4Q92889 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ERCC4Q92889 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.16■□□□□ 0.66
ERCC4Q92889 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
ERCC4Q92889 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms