Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC002310.6-201ENST00000624451 1377 ntBASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC108073.2-201ENST00000464002 357 ntBASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC108751.1-201ENST00000490852 363 ntBASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 DUX4L17-201ENST00000557360 1267 ntBASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 AC004790.2-201ENST00000623588 572 ntBASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SYNE3Q6ZMZ3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 TOP3BP1-201ENST00000420768 1380 ntBASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 AC129492.6-201ENST00000611383 1305 ntBASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 SLC25A6P2-201ENST00000497974 877 ntBASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 RNA5SP415-201ENST00000517246 115 ntBASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 UNC93B6-202ENST00000528242 690 ntBASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SYNE3Q6ZMZ3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 PCDHB17P-201ENST00000539533 2393 ntBASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 IGHV3-22-201ENST00000520721 359 ntBASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 MIR4751-201ENST00000578027 74 ntBASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SYNE3Q6ZMZ3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SYNE3Q6ZMZ3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms