Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC078925.2-201ENST00000624013 1973 ntBASIC20.37■□□□□ 0.85
VPS53Q5VIR6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS53Q5VIR6 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 AC007967.2-201ENST00000432613 625 ntBASIC20.36■□□□□ 0.85
VPS53Q5VIR6 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 MIR4751-201ENST00000578027 74 ntBASIC20.36■□□□□ 0.85
VPS53Q5VIR6 GGTLC5P-201ENST00000617623 998 ntBASIC20.36■□□□□ 0.85
VPS53Q5VIR6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.36■□□□□ 0.85
VPS53Q5VIR6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 MRPL20P1-201ENST00000400819 433 ntBASIC20.35■□□□□ 0.85
VPS53Q5VIR6 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.35■□□□□ 0.85
VPS53Q5VIR6 KRT18P2-201ENST00000447938 1258 ntBASIC20.35■□□□□ 0.85
VPS53Q5VIR6 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS53Q5VIR6 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 VN2R19P-201ENST00000442399 1052 ntBASIC20.34■□□□□ 0.85
VPS53Q5VIR6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.34■□□□□ 0.85
VPS53Q5VIR6 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS53Q5VIR6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms