Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 PAWRP1-201ENST00000451083 565 ntBASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 KRT18P3-201ENST00000451602 1288 ntBASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 AL645728.1-201ENST00000366221 2101 ntBASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTCHD3Q3KNS1 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 PI4KAP1-204ENST00000612579 1703 ntBASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 BX842568.4-201ENST00000421222 227 ntBASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 AC108751.1-201ENST00000490852 363 ntBASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 FAM197Y3-203ENST00000618346 717 ntBASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTCHD3Q3KNS1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PCDHA14-201ENST00000506751 2298 ntBASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PGAM5P1-201ENST00000518923 814 ntBASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 AP002490.2-201ENST00000524791 560 ntBASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 AL805961.1-202ENST00000641562 540 ntBASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms