Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.52■□□□□ 0.72
SF3A1Q15459 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
SF3A1Q15459 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.52■□□□□ 0.72
SF3A1Q15459 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 PRYP5-201ENST00000451909 266 ntBASIC19.52■□□□□ 0.72
SF3A1Q15459 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.52■□□□□ 0.72
SF3A1Q15459 NKAPP1-205ENST00000585790 367 ntBASIC19.52■□□□□ 0.72
SF3A1Q15459 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 AC064862.7-201ENST00000604520 867 ntBASIC19.52■□□□□ 0.72
SF3A1Q15459 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.52■□□□□ 0.72
SF3A1Q15459 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SF3A1Q15459 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 AL645728.1-201ENST00000366221 2101 ntBASIC19.52■□□□□ 0.72
SF3A1Q15459 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
SF3A1Q15459 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SF3A1Q15459 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SF3A1Q15459 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SF3A1Q15459 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SF3A1Q15459 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.51■□□□□ 0.71
SF3A1Q15459 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.51■□□□□ 0.71
SF3A1Q15459 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 KRT18P31-201ENST00000506277 1292 ntBASIC19.51■□□□□ 0.71
SF3A1Q15459 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.51■□□□□ 0.71
SF3A1Q15459 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.51■□□□□ 0.71
SF3A1Q15459 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.51■□□□□ 0.71
SF3A1Q15459 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.51■□□□□ 0.71
SF3A1Q15459 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 AL590787.1-201ENST00000568856 1315 ntBASIC19.51■□□□□ 0.71
SF3A1Q15459 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SF3A1Q15459 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.5■□□□□ 0.71
SF3A1Q15459 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SF3A1Q15459 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
SF3A1Q15459 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 AL353135.1-201ENST00000606729 504 ntBASIC19.5■□□□□ 0.71
SF3A1Q15459 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.5■□□□□ 0.71
SF3A1Q15459 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SF3A1Q15459 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SF3A1Q15459 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SF3A1Q15459 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms