Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC11.96□□□□□ -0.5
PRKDCP78527 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC11.96□□□□□ -0.5
PRKDCP78527 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC11.95□□□□□ -0.5
PRKDCP78527 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 AC234644.1-201ENST00000406065 370 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 AL158212.4-201ENST00000624062 1286 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 RN7SL720P-201ENST00000488178 304 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 CU634019.7-201ENST00000624153 1185 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 FP236241.2-201ENST00000624906 1185 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
PRKDCP78527 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC11.95□□□□□ -0.5
PRKDCP78527 SUOX-214ENST00000551841 906 ntTSL 3 BASIC11.95□□□□□ -0.5
PRKDCP78527 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 MIR3907-201ENST00000579424 151 ntBASIC11.95□□□□□ -0.5
PRKDCP78527 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC11.95□□□□□ -0.5
PRKDCP78527 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC11.95□□□□□ -0.5
PRKDCP78527 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC11.95□□□□□ -0.5
PRKDCP78527 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC11.95□□□□□ -0.5
PRKDCP78527 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
PRKDCP78527 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 AC098859.1-201ENST00000502915 1238 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 CYP2A7P1-201ENST00000595391 815 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
PRKDCP78527 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
PRKDCP78527 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 AC005077.2-201ENST00000449786 690 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 SCARNA20.5-201ENST00000516991 142 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC11.94□□□□□ -0.5
PRKDCP78527 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC11.94□□□□□ -0.5
PRKDCP78527 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 AC073130.3-201ENST00000624389 2278 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
PRKDCP78527 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 SERBP1P3-201ENST00000459980 809 ntBASIC11.94□□□□□ -0.5
PRKDCP78527 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.94□□□□□ -0.5
PRKDCP78527 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC11.94□□□□□ -0.5
PRKDCP78527 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC11.94□□□□□ -0.5
PRKDCP78527 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PRKDCP78527 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC11.94□□□□□ -0.5
PRKDCP78527 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms