Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.35■□□□□ 0.21
FOXA1P55317 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA1P55317 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA1P55317 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 AC013467.2-201ENST00000605472 835 ntBASIC16.35■□□□□ 0.21
FOXA1P55317 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 AL671710.1-201ENST00000610245 2349 ntBASIC16.35■□□□□ 0.21
FOXA1P55317 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
FOXA1P55317 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA1P55317 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA1P55317 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA1P55317 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
FOXA1P55317 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
FOXA1P55317 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.34■□□□□ 0.21
FOXA1P55317 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXA1P55317 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA1P55317 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA1P55317 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.33■□□□□ 0.21
FOXA1P55317 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA1P55317 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA1P55317 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA1P55317 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXA1P55317 PAUPAR-201ENST00000630360 2965 ntBASIC16.33■□□□□ 0.21
FOXA1P55317 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 ARMC10P1-201ENST00000313754 855 ntBASIC16.33■□□□□ 0.2
FOXA1P55317 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXA1P55317 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXA1P55317 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 AL139424.1-201ENST00000607572 797 ntBASIC16.33■□□□□ 0.2
FOXA1P55317 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.33■□□□□ 0.2
FOXA1P55317 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA1P55317 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA1P55317 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
FOXA1P55317 AL356309.3-201ENST00000624132 1934 ntBASIC16.33■□□□□ 0.2
FOXA1P55317 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms