Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.77■□□□□ 0.12
CDH12P55289 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.77■□□□□ 0.12
CDH12P55289 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CDH12P55289 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 ALOX12P2-203ENST00000570921 1945 ntBASIC15.77■□□□□ 0.12
CDH12P55289 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.77■□□□□ 0.12
CDH12P55289 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.77■□□□□ 0.12
CDH12P55289 AC074051.2-201ENST00000565115 352 ntBASIC15.77■□□□□ 0.12
CDH12P55289 MIR3180-1-201ENST00000580374 94 ntBASIC15.77■□□□□ 0.12
CDH12P55289 MIR3180-3-201ENST00000584616 94 ntBASIC15.77■□□□□ 0.12
CDH12P55289 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.77■□□□□ 0.12
CDH12P55289 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
CDH12P55289 AL358472.4-201ENST00000633140 710 ntBASIC15.77■□□□□ 0.12
CDH12P55289 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
CDH12P55289 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CDH12P55289 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH12P55289 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.77■□□□□ 0.11
CDH12P55289 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.77■□□□□ 0.11
CDH12P55289 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.77■□□□□ 0.11
CDH12P55289 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
CDH12P55289 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH12P55289 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 TUBB8P12-201ENST00000308911 1335 ntBASIC15.76■□□□□ 0.11
CDH12P55289 TUBB7P-202ENST00000428444 1305 ntBASIC15.76■□□□□ 0.11
CDH12P55289 TUBB8P7-204ENST00000567960 1332 ntBASIC15.76■□□□□ 0.11
CDH12P55289 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.76■□□□□ 0.11
CDH12P55289 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.76■□□□□ 0.11
CDH12P55289 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
CDH12P55289 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
CDH12P55289 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CDH12P55289 AC007950.2-201ENST00000615045 2347 ntBASIC15.76■□□□□ 0.11
CDH12P55289 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH12P55289 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
CDH12P55289 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
CDH12P55289 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CDH12P55289 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 PMPCAP1-201ENST00000508114 1576 ntBASIC15.75■□□□□ 0.11
CDH12P55289 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH12P55289 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
CDH12P55289 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH12P55289 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CDH12P55289 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH12P55289 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH12P55289 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms