Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
HMGCS2P54868 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.32■□□□□ 0.68
HMGCS2P54868 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.32■□□□□ 0.68
HMGCS2P54868 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 HLA-V-204ENST00000476601 1289 ntBASIC19.32■□□□□ 0.68
HMGCS2P54868 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.32■□□□□ 0.68
HMGCS2P54868 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HMGCS2P54868 AC027307.3-201ENST00000594262 1100 ntBASIC19.32■□□□□ 0.68
HMGCS2P54868 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGCS2P54868 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGCS2P54868 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGCS2P54868 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
HMGCS2P54868 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
HMGCS2P54868 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGCS2P54868 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 AC004233.3-201ENST00000607794 1269 ntBASIC19.31■□□□□ 0.68
HMGCS2P54868 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 AC073439.1-201ENST00000624121 1774 ntBASIC19.31■□□□□ 0.68
HMGCS2P54868 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HMGCS2P54868 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGCS2P54868 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
HMGCS2P54868 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGCS2P54868 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGCS2P54868 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGCS2P54868 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HMGCS2P54868 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HMGCS2P54868 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGCS2P54868 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGCS2P54868 SPTLC1P1-201ENST00000447199 261 ntBASIC19.3■□□□□ 0.68
HMGCS2P54868 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGCS2P54868 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGCS2P54868 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGCS2P54868 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGCS2P54868 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGCS2P54868 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 LINC02012-201ENST00000608206 1725 ntBASIC19.3■□□□□ 0.68
HMGCS2P54868 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HMGCS2P54868 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HMGCS2P54868 CROCCP2-202ENST00000412962 2773 ntBASIC19.3■□□□□ 0.68
HMGCS2P54868 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGCS2P54868 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGCS2P54868 AC092053.1-201ENST00000605787 1936 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms