Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A4P53420 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A4P53420 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 AP001094.4-201ENST00000579008 2176 ntBASIC17.79■□□□□ 0.44
COL4A4P53420 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A4P53420 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 AC092053.1-201ENST00000605787 1936 ntBASIC17.78■□□□□ 0.44
COL4A4P53420 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 HLA-H-201ENST00000383620 1096 ntBASIC17.78■□□□□ 0.44
COL4A4P53420 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A4P53420 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.78■□□□□ 0.44
COL4A4P53420 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.78■□□□□ 0.44
COL4A4P53420 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.78■□□□□ 0.44
COL4A4P53420 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A4P53420 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A4P53420 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A4P53420 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A4P53420 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 AL353705.2-201ENST00000428243 662 ntBASIC17.77■□□□□ 0.44
COL4A4P53420 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.77■□□□□ 0.44
COL4A4P53420 ZNF890P-202ENST00000530367 1156 ntBASIC17.77■□□□□ 0.44
COL4A4P53420 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 SLC7A15P-201ENST00000424028 1363 ntBASIC17.77■□□□□ 0.44
COL4A4P53420 AL391825.1-201ENST00000457671 1364 ntBASIC17.77■□□□□ 0.44
COL4A4P53420 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A4P53420 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
COL4A4P53420 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A4P53420 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.77■□□□□ 0.44
COL4A4P53420 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
COL4A4P53420 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A4P53420 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
COL4A4P53420 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL4A4P53420 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
COL4A4P53420 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL4A4P53420 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A4P53420 DFFBP1-201ENST00000433250 979 ntBASIC17.77■□□□□ 0.43
COL4A4P53420 AC092658.1-201ENST00000505836 891 ntBASIC17.77■□□□□ 0.43
COL4A4P53420 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.43
COL4A4P53420 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A4P53420 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A4P53420 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.77■□□□□ 0.43
COL4A4P53420 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A4P53420 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 AC087499.5-201ENST00000452760 1342 ntBASIC17.76■□□□□ 0.43
COL4A4P53420 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A4P53420 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A4P53420 FAM86MP-201ENST00000340703 885 ntBASIC17.76■□□□□ 0.43
COL4A4P53420 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
COL4A4P53420 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.76■□□□□ 0.43
COL4A4P53420 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A4P53420 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms