Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXA1P49639 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.07□□□□□ -0.16
HOXA1P49639 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.07□□□□□ -0.16
HOXA1P49639 AC005104.2-201ENST00000427818 678 ntBASIC14.07□□□□□ -0.16
HOXA1P49639 ATP5G1P1-201ENST00000448724 379 ntBASIC14.07□□□□□ -0.16
HOXA1P49639 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXA1P49639 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXA1P49639 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HOXA1P49639 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HOXA1P49639 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 TNRC18P2-201ENST00000417666 2714 ntBASIC14.07□□□□□ -0.16
HOXA1P49639 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HOXA1P49639 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA1P49639 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA1P49639 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HOXA1P49639 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXA1P49639 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXA1P49639 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXA1P49639 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HOXA1P49639 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 LIN28AP1-201ENST00000429574 405 ntBASIC14.06□□□□□ -0.16
HOXA1P49639 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
HOXA1P49639 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
HOXA1P49639 AL139327.4-201ENST00000612362 153 ntBASIC14.06□□□□□ -0.16
HOXA1P49639 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HOXA1P49639 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXA1P49639 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXA1P49639 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXA1P49639 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
HOXA1P49639 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms