Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 AL596087.1-201ENST00000400979 1969 ntBASIC16.16■□□□□ 0.18
MSX2P35548 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.16■□□□□ 0.18
MSX2P35548 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.16■□□□□ 0.18
MSX2P35548 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
MSX2P35548 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 PRAL-201ENST00000624952 3286 ntBASIC16.15■□□□□ 0.18
MSX2P35548 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
MSX2P35548 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
MSX2P35548 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 AC073347.1-201ENST00000421633 2643 ntBASIC16.15■□□□□ 0.18
MSX2P35548 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 AL441883.1-201ENST00000566170 1045 ntBASIC16.15■□□□□ 0.18
MSX2P35548 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.15■□□□□ 0.18
MSX2P35548 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 STK25P1-201ENST00000585406 838 ntBASIC16.15■□□□□ 0.18
MSX2P35548 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.15■□□□□ 0.18
MSX2P35548 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.15■□□□□ 0.18
MSX2P35548 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 KRT17P2-201ENST00000300992 1314 ntBASIC16.15■□□□□ 0.18
MSX2P35548 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MSX2P35548 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MSX2P35548 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
MSX2P35548 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
MSX2P35548 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 MMP23A-201ENST00000234610 1017 ntBASIC16.14■□□□□ 0.17
MSX2P35548 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
MSX2P35548 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.14■□□□□ 0.17
MSX2P35548 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.14■□□□□ 0.17
MSX2P35548 AC005332.3-201ENST00000589904 676 ntBASIC16.14■□□□□ 0.17
MSX2P35548 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
MSX2P35548 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
MSX2P35548 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
MSX2P35548 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MSX2P35548 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.14■□□□□ 0.17
MSX2P35548 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
MSX2P35548 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSX2P35548 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MSX2P35548 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
MSX2P35548 AL603832.2-201ENST00000566195 2125 ntBASIC16.13■□□□□ 0.17
MSX2P35548 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.13■□□□□ 0.17
MSX2P35548 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms