Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SCN4AP35499 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.58■□□□□ 0.73
SCN4AP35499 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.58■□□□□ 0.73
SCN4AP35499 AL442647.2-201ENST00000429864 857 ntBASIC19.58■□□□□ 0.73
SCN4AP35499 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.58■□□□□ 0.73
SCN4AP35499 AC093724.1-201ENST00000448659 1027 ntBASIC19.58■□□□□ 0.73
SCN4AP35499 C2orf69P2-201ENST00000562032 1123 ntBASIC19.58■□□□□ 0.73
SCN4AP35499 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.58■□□□□ 0.73
SCN4AP35499 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SCN4AP35499 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN4AP35499 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.58■□□□□ 0.73
SCN4AP35499 AC087289.5-201ENST00000586076 3175 ntBASIC19.58■□□□□ 0.72
SCN4AP35499 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 RNF165-205ENST00000588679 2904 ntBASIC19.58■□□□□ 0.72
SCN4AP35499 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.58■□□□□ 0.72
SCN4AP35499 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SCN4AP35499 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN4AP35499 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SCN4AP35499 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.58■□□□□ 0.72
SCN4AP35499 RNA5SP423-201ENST00000517127 109 ntBASIC19.58■□□□□ 0.72
SCN4AP35499 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.58■□□□□ 0.72
SCN4AP35499 MIR3615-201ENST00000581999 87 ntBASIC19.58■□□□□ 0.72
SCN4AP35499 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SCN4AP35499 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SCN4AP35499 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN4AP35499 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 AC006033.1-201ENST00000440505 426 ntBASIC19.57■□□□□ 0.72
SCN4AP35499 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN4AP35499 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SCN4AP35499 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN4AP35499 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN4AP35499 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SCN4AP35499 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SCN4AP35499 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.56■□□□□ 0.72
SCN4AP35499 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.56■□□□□ 0.72
SCN4AP35499 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.56■□□□□ 0.72
SCN4AP35499 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.56■□□□□ 0.72
SCN4AP35499 SLC25A47P1-201ENST00000531577 414 ntBASIC19.56■□□□□ 0.72
SCN4AP35499 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.56■□□□□ 0.72
SCN4AP35499 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.56■□□□□ 0.72
SCN4AP35499 AC025048.3-201ENST00000590609 569 ntBASIC19.56■□□□□ 0.72
SCN4AP35499 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 AC005702.4-201ENST00000618393 416 ntBASIC19.56■□□□□ 0.72
SCN4AP35499 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN4AP35499 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN4AP35499 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN4AP35499 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms