Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
RPA3P35244 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.1■□□□□ 0.33
RPA3P35244 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RPA3P35244 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.09■□□□□ 0.33
RPA3P35244 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 NUS1P1-201ENST00000446295 882 ntBASIC17.09■□□□□ 0.33
RPA3P35244 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.09■□□□□ 0.33
RPA3P35244 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.09■□□□□ 0.33
RPA3P35244 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.09■□□□□ 0.33
RPA3P35244 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 AC114341.1-201ENST00000618070 349 ntBASIC17.09■□□□□ 0.33
RPA3P35244 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RPA3P35244 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.09■□□□□ 0.33
RPA3P35244 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.09■□□□□ 0.33
RPA3P35244 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.08■□□□□ 0.33
RPA3P35244 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RPA3P35244 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RPA3P35244 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RPA3P35244 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RPA3P35244 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.08■□□□□ 0.33
RPA3P35244 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.08■□□□□ 0.32
RPA3P35244 AC122714.2-201ENST00000502787 707 ntBASIC17.08■□□□□ 0.32
RPA3P35244 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.08■□□□□ 0.32
RPA3P35244 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.08■□□□□ 0.32
RPA3P35244 STK25P1-201ENST00000585406 838 ntBASIC17.08■□□□□ 0.32
RPA3P35244 CLEC4GP1-201ENST00000596555 870 ntBASIC17.08■□□□□ 0.32
RPA3P35244 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
RPA3P35244 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
RPA3P35244 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.08■□□□□ 0.32
RPA3P35244 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RPA3P35244 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.07■□□□□ 0.32
RPA3P35244 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.07■□□□□ 0.32
RPA3P35244 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RPA3P35244 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.07■□□□□ 0.32
RPA3P35244 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms