Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 AL603756.1-201ENST00000606511 2163 ntBASIC18.93■□□□□ 0.62
CIITAP33076 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.93■□□□□ 0.62
CIITAP33076 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CIITAP33076 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
CIITAP33076 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CIITAP33076 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CIITAP33076 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.92■□□□□ 0.62
CIITAP33076 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CIITAP33076 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CIITAP33076 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 AC211486.1-202ENST00000416371 468 ntBASIC18.92■□□□□ 0.62
CIITAP33076 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.92■□□□□ 0.62
CIITAP33076 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 HLA-J-202ENST00000469281 1241 ntBASIC18.92■□□□□ 0.62
CIITAP33076 AC211476.1-201ENST00000503899 468 ntBASIC18.92■□□□□ 0.62
CIITAP33076 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CIITAP33076 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.92■□□□□ 0.62
CIITAP33076 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CIITAP33076 AC134684.3-201ENST00000641758 218 ntBASIC18.92■□□□□ 0.62
CIITAP33076 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.92■□□□□ 0.62
CIITAP33076 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
CIITAP33076 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CIITAP33076 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.92■□□□□ 0.62
CIITAP33076 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 AL512652.2-201ENST00000625156 1716 ntBASIC18.91■□□□□ 0.62
CIITAP33076 RNF216P1-203ENST00000404404 2427 ntBASIC18.91■□□□□ 0.62
CIITAP33076 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
CIITAP33076 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.91■□□□□ 0.62
CIITAP33076 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 AL671277.1-201ENST00000429656 993 ntBASIC18.91■□□□□ 0.62
CIITAP33076 AC004967.1-201ENST00000453589 447 ntBASIC18.91■□□□□ 0.62
CIITAP33076 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.91■□□□□ 0.62
CIITAP33076 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CIITAP33076 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.91■□□□□ 0.62
CIITAP33076 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.91■□□□□ 0.62
CIITAP33076 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.91■□□□□ 0.62
CIITAP33076 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.91■□□□□ 0.62
CIITAP33076 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CIITAP33076 AKAP8P1-201ENST00000434743 1349 ntBASIC18.91■□□□□ 0.62
CIITAP33076 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.91■□□□□ 0.62
CIITAP33076 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.91■□□□□ 0.62
CIITAP33076 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CIITAP33076 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CIITAP33076 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.9■□□□□ 0.62
CIITAP33076 AC006538.1-201ENST00000567905 1585 ntBASIC18.9■□□□□ 0.62
CIITAP33076 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CIITAP33076 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CIITAP33076 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
CIITAP33076 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms