Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USF1P22415 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USF1P22415 AL023806.1-201ENST00000603994 1649 ntBASIC14.31□□□□□ -0.12
USF1P22415 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
USF1P22415 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 FAM8A3P-201ENST00000427218 844 ntBASIC14.31□□□□□ -0.12
USF1P22415 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.31□□□□□ -0.12
USF1P22415 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.31□□□□□ -0.12
USF1P22415 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.31□□□□□ -0.12
USF1P22415 AC025678.2-201ENST00000562061 970 ntBASIC14.31□□□□□ -0.12
USF1P22415 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.31□□□□□ -0.12
USF1P22415 AC105339.1-204ENST00000636249 355 ntBASIC14.31□□□□□ -0.12
USF1P22415 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.31□□□□□ -0.12
USF1P22415 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.31□□□□□ -0.12
USF1P22415 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
USF1P22415 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.31□□□□□ -0.12
USF1P22415 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
USF1P22415 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USF1P22415 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USF1P22415 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 AL135999.2-201ENST00000622438 1686 ntBASIC14.3□□□□□ -0.12
USF1P22415 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 LINC00304-203ENST00000565008 1864 ntBASIC14.3□□□□□ -0.12
USF1P22415 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
USF1P22415 AC004461.1-201ENST00000412461 403 ntBASIC14.3□□□□□ -0.12
USF1P22415 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.3□□□□□ -0.12
USF1P22415 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.3□□□□□ -0.12
USF1P22415 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 AC129492.6-201ENST00000611383 1305 ntBASIC14.3□□□□□ -0.12
USF1P22415 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.3□□□□□ -0.12
USF1P22415 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.3□□□□□ -0.12
USF1P22415 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms