Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.81■□□□□ 0.28
MSH3P20585 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.81■□□□□ 0.28
MSH3P20585 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSH3P20585 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH3P20585 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
MSH3P20585 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
MSH3P20585 AL022342.1-201ENST00000400363 863 ntBASIC16.8■□□□□ 0.28
MSH3P20585 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.8■□□□□ 0.28
MSH3P20585 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 VN2R19P-201ENST00000442399 1052 ntBASIC16.8■□□□□ 0.28
MSH3P20585 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 AC034105.1-201ENST00000563488 319 ntBASIC16.8■□□□□ 0.28
MSH3P20585 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MSH3P20585 AC106730.1-201ENST00000566722 1090 ntBASIC16.8■□□□□ 0.28
MSH3P20585 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.8■□□□□ 0.28
MSH3P20585 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.8■□□□□ 0.28
MSH3P20585 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
MSH3P20585 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSH3P20585 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.79■□□□□ 0.28
MSH3P20585 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 AL118508.1-201ENST00000613502 2345 ntBASIC16.79■□□□□ 0.28
MSH3P20585 AC129492.6-201ENST00000611383 1305 ntBASIC16.79■□□□□ 0.28
MSH3P20585 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MSH3P20585 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
MSH3P20585 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.79■□□□□ 0.28
MSH3P20585 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.79■□□□□ 0.28
MSH3P20585 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.79■□□□□ 0.28
MSH3P20585 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
MSH3P20585 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
MSH3P20585 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
MSH3P20585 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.79■□□□□ 0.28
MSH3P20585 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.79■□□□□ 0.28
MSH3P20585 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
MSH3P20585 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSH3P20585 KRT8P49-201ENST00000604166 1432 ntBASIC16.79■□□□□ 0.28
MSH3P20585 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.78■□□□□ 0.28
MSH3P20585 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms