Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.36■□□□□ 0.21
HOXC4P09017 SPDYE7P-202ENST00000420373 878 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 AC142381.1-201ENST00000426099 345 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 CNN2P2-201ENST00000443536 909 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 CNN2P3-201ENST00000450201 906 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.36■□□□□ 0.21
HOXC4P09017 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 HLA-J-202ENST00000469281 1241 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.36■□□□□ 0.21
HOXC4P09017 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 AC026150.2-201ENST00000564693 1156 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.36■□□□□ 0.21
HOXC4P09017 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.36■□□□□ 0.21
HOXC4P09017 AL136317.3-201ENST00000618497 906 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HOXC4P09017 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HOXC4P09017 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HOXC4P09017 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 LTB4R2-202ENST00000528054 3092 ntBASIC16.36■□□□□ 0.21
HOXC4P09017 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HOXC4P09017 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.36■□□□□ 0.21
HOXC4P09017 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HOXC4P09017 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.36■□□□□ 0.21
HOXC4P09017 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.35■□□□□ 0.21
HOXC4P09017 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.35■□□□□ 0.21
HOXC4P09017 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.35■□□□□ 0.21
HOXC4P09017 HMGN1P19-201ENST00000436976 333 ntBASIC16.35■□□□□ 0.21
HOXC4P09017 SPDYE14P-201ENST00000442619 822 ntBASIC16.35■□□□□ 0.21
HOXC4P09017 ALG1L8P-201ENST00000533887 760 ntBASIC16.35■□□□□ 0.21
HOXC4P09017 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.35■□□□□ 0.21
HOXC4P09017 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.35■□□□□ 0.21
HOXC4P09017 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.35■□□□□ 0.21
HOXC4P09017 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.35■□□□□ 0.21
HOXC4P09017 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.35■□□□□ 0.21
HOXC4P09017 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HOXC4P09017 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 AC060834.1-201ENST00000443027 2032 ntBASIC16.35■□□□□ 0.21
HOXC4P09017 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HOXC4P09017 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.35■□□□□ 0.21
HOXC4P09017 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.34■□□□□ 0.21
HOXC4P09017 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.34■□□□□ 0.21
HOXC4P09017 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.34■□□□□ 0.21
HOXC4P09017 FAM86GP-201ENST00000448322 971 ntBASIC16.34■□□□□ 0.21
HOXC4P09017 PRYP6-201ENST00000514804 343 ntBASIC16.34■□□□□ 0.21
HOXC4P09017 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HOXC4P09017 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.34■□□□□ 0.21
HOXC4P09017 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HOXC4P09017 AC051619.7-201ENST00000568314 623 ntBASIC16.34■□□□□ 0.21
HOXC4P09017 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.34■□□□□ 0.21
HOXC4P09017 AC020765.3-201ENST00000613051 740 ntBASIC16.34■□□□□ 0.21
HOXC4P09017 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.34■□□□□ 0.21
HOXC4P09017 Z92544.3-201ENST00000624747 417 ntBASIC16.34■□□□□ 0.21
HOXC4P09017 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.34■□□□□ 0.21
HOXC4P09017 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
HOXC4P09017 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HOXC4P09017 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HOXC4P09017 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.34■□□□□ 0.21
HOXC4P09017 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms