Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
COL2A1P02458 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.45■□□□□ 0.7
COL2A1P02458 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL2A1P02458 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL2A1P02458 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL2A1P02458 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL2A1P02458 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.45■□□□□ 0.7
COL2A1P02458 AC141586.5-201ENST00000624546 2050 ntBASIC19.45■□□□□ 0.7
COL2A1P02458 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.44■□□□□ 0.7
COL2A1P02458 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL2A1P02458 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL2A1P02458 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
COL2A1P02458 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.44■□□□□ 0.7
COL2A1P02458 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 AC024267.1-201ENST00000582320 895 ntBASIC19.44■□□□□ 0.7
COL2A1P02458 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.44■□□□□ 0.7
COL2A1P02458 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.44■□□□□ 0.7
COL2A1P02458 AC008738.7-201ENST00000609744 511 ntBASIC19.44■□□□□ 0.7
COL2A1P02458 AC063926.2-201ENST00000623766 1308 ntBASIC19.44■□□□□ 0.7
COL2A1P02458 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL2A1P02458 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL2A1P02458 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.43■□□□□ 0.7
COL2A1P02458 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.43■□□□□ 0.7
COL2A1P02458 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.43■□□□□ 0.7
COL2A1P02458 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.43■□□□□ 0.7
COL2A1P02458 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.43■□□□□ 0.7
COL2A1P02458 AC009407.1-201ENST00000568958 598 ntBASIC19.43■□□□□ 0.7
COL2A1P02458 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.43■□□□□ 0.7
COL2A1P02458 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.43■□□□□ 0.7
COL2A1P02458 AL589739.1-201ENST00000607720 493 ntBASIC19.43■□□□□ 0.7
COL2A1P02458 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.43■□□□□ 0.7
COL2A1P02458 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.43■□□□□ 0.7
COL2A1P02458 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL2A1P02458 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.43■□□□□ 0.7
COL2A1P02458 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL2A1P02458 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 AL589702.1-201ENST00000641229 1509 ntBASIC19.43■□□□□ 0.7
COL2A1P02458 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL2A1P02458 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
COL2A1P02458 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL2A1P02458 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
COL2A1P02458 PIN1P1-201ENST00000412108 996 ntBASIC19.42■□□□□ 0.7
COL2A1P02458 MTND6P24-201ENST00000440466 518 ntBASIC19.42■□□□□ 0.7
COL2A1P02458 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.42■□□□□ 0.7
COL2A1P02458 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.42■□□□□ 0.7
COL2A1P02458 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL2A1P02458 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 AC004840.1-201ENST00000636359 365 ntBASIC19.42■□□□□ 0.7
COL2A1P02458 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL2A1P02458 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL2A1P02458 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.42■□□□□ 0.7
COL2A1P02458 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL2A1P02458 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 AC060834.1-201ENST00000443027 2032 ntBASIC19.42■□□□□ 0.7
COL2A1P02458 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL2A1P02458 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL2A1P02458 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.42■□□□□ 0.7
COL2A1P02458 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms