Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 AC108751.1-201ENST00000490852 363 ntBASIC19.49■□□□□ 0.71
CTDNEP1O95476 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 AC005412.3-201ENST00000580309 715 ntBASIC19.49■□□□□ 0.71
CTDNEP1O95476 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTDNEP1O95476 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CTDNEP1O95476 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 CYP2T1P-202ENST00000641596 2535 ntBASIC19.48■□□□□ 0.71
CTDNEP1O95476 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 RNA5SP415-201ENST00000517246 115 ntBASIC19.48■□□□□ 0.71
CTDNEP1O95476 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 AP001005.1-201ENST00000571755 1248 ntBASIC19.48■□□□□ 0.71
CTDNEP1O95476 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.48■□□□□ 0.71
CTDNEP1O95476 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTDNEP1O95476 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AL391005.1-201ENST00000623953 2435 ntBASIC19.47■□□□□ 0.71
CTDNEP1O95476 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AC087641.1-201ENST00000557561 1021 ntBASIC19.47■□□□□ 0.71
CTDNEP1O95476 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AL121894.2-201ENST00000602977 491 ntBASIC19.47■□□□□ 0.71
CTDNEP1O95476 AC010654.1-201ENST00000615722 808 ntBASIC19.47■□□□□ 0.71
CTDNEP1O95476 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 AC026691.1-201ENST00000602502 2017 ntBASIC19.47■□□□□ 0.71
CTDNEP1O95476 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTDNEP1O95476 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.47■□□□□ 0.71
CTDNEP1O95476 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CTDNEP1O95476 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTDNEP1O95476 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CTDNEP1O95476 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTDNEP1O95476 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.46■□□□□ 0.71
CTDNEP1O95476 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms