Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX3O95343 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.51■□□□□ 0.23
SIX3O95343 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SIX3O95343 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX3O95343 AL139424.1-201ENST00000607572 797 ntBASIC16.51■□□□□ 0.23
SIX3O95343 AL355877.3-201ENST00000622820 899 ntBASIC16.51■□□□□ 0.23
SIX3O95343 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 AC026691.1-201ENST00000602502 2017 ntBASIC16.51■□□□□ 0.23
SIX3O95343 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SIX3O95343 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.51■□□□□ 0.23
SIX3O95343 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SIX3O95343 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SIX3O95343 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SIX3O95343 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX3O95343 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 PCDHA1-201ENST00000378133 2726 ntBASIC16.5■□□□□ 0.23
SIX3O95343 CICP6-201ENST00000457191 2729 ntBASIC16.5■□□□□ 0.23
SIX3O95343 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 FGFR3P6-201ENST00000457012 610 ntBASIC16.5■□□□□ 0.23
SIX3O95343 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.5■□□□□ 0.23
SIX3O95343 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.5■□□□□ 0.23
SIX3O95343 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.5■□□□□ 0.23
SIX3O95343 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 AL589182.2-201ENST00000619332 1049 ntBASIC16.5■□□□□ 0.23
SIX3O95343 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX3O95343 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.5■□□□□ 0.23
SIX3O95343 AC006538.1-201ENST00000567905 1585 ntBASIC16.5■□□□□ 0.23
SIX3O95343 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SIX3O95343 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 CYP2T1P-202ENST00000641596 2535 ntBASIC16.5■□□□□ 0.23
SIX3O95343 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.5■□□□□ 0.23
SIX3O95343 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX3O95343 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX3O95343 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 AC006277.1-201ENST00000624348 1610 ntBASIC16.49■□□□□ 0.23
SIX3O95343 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX3O95343 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX3O95343 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX3O95343 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX3O95343 TSPY19P-201ENST00000418461 509 ntBASIC16.49■□□□□ 0.23
SIX3O95343 TSPY18P-201ENST00000441642 509 ntBASIC16.49■□□□□ 0.23
SIX3O95343 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX3O95343 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX3O95343 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX3O95343 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 AC008608.2-201ENST00000606089 416 ntBASIC16.49■□□□□ 0.23
SIX3O95343 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
SIX3O95343 AL121772.3-201ENST00000610840 674 ntBASIC16.49■□□□□ 0.23
SIX3O95343 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SIX3O95343 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SIX3O95343 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX3O95343 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX3O95343 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms