Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 AC016027.1-202ENST00000607927 1699 ntBASIC16.46■□□□□ 0.23
SDC3O75056 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SDC3O75056 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDC3O75056 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDC3O75056 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
SDC3O75056 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SDC3O75056 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC3O75056 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 AC106820.2-201ENST00000563775 3264 ntBASIC16.45■□□□□ 0.22
SDC3O75056 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC3O75056 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.45■□□□□ 0.22
SDC3O75056 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.45■□□□□ 0.22
SDC3O75056 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC3O75056 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.45■□□□□ 0.22
SDC3O75056 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.45■□□□□ 0.22
SDC3O75056 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 AC087641.1-201ENST00000557561 1021 ntBASIC16.45■□□□□ 0.22
SDC3O75056 KRT8P23-201ENST00000560090 1207 ntBASIC16.45■□□□□ 0.22
SDC3O75056 AC239800.4-201ENST00000603712 296 ntBASIC16.45■□□□□ 0.22
SDC3O75056 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.45■□□□□ 0.22
SDC3O75056 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDC3O75056 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 AC008764.6-201ENST00000595909 2069 ntBASIC16.44■□□□□ 0.22
SDC3O75056 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SDC3O75056 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.44■□□□□ 0.22
SDC3O75056 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 SLC25A1P3-201ENST00000395415 828 ntBASIC16.44■□□□□ 0.22
SDC3O75056 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 AC236430.1-201ENST00000402231 743 ntBASIC16.44■□□□□ 0.22
SDC3O75056 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.44■□□□□ 0.22
SDC3O75056 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 UGT1A2P-201ENST00000454886 866 ntBASIC16.44■□□□□ 0.22
SDC3O75056 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.44■□□□□ 0.22
SDC3O75056 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 AC091167.2-201ENST00000579581 588 ntBASIC16.44■□□□□ 0.22
SDC3O75056 AC027307.2-201ENST00000591252 911 ntBASIC16.44■□□□□ 0.22
SDC3O75056 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SDC3O75056 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.44■□□□□ 0.22
SDC3O75056 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.44■□□□□ 0.22
SDC3O75056 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDC3O75056 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.43■□□□□ 0.22
SDC3O75056 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.43■□□□□ 0.22
SDC3O75056 AC131009.4-201ENST00000624048 1740 ntBASIC16.43■□□□□ 0.22
SDC3O75056 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SDC3O75056 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms