Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HLA-J-202ENST00000469281 1241 ntBASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 AC013467.2-201ENST00000605472 835 ntBASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIF3AQ9Y2N7 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.27■□□□□ 0.03
HIF3AQ9Y2N7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TNRC18P3-201ENST00000441896 2691 ntBASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.26■□□□□ 0.03
HIF3AQ9Y2N7 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 PAWRP1-201ENST00000451083 565 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SART3-203ENST00000546611 1184 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC091304.2-201ENST00000564639 760 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC139887.3-201ENST00000568585 713 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC008608.2-201ENST00000606089 416 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 REXO1L6P-202ENST00000619970 1078 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AC079416.2-201ENST00000625035 1193 ntBASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 AL139011.1-202ENST00000642063 584 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms