Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 OR6D1P-203ENST00000641209 4860 ntBASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC4Q9NTJ3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 AC006277.1-201ENST00000624348 1610 ntBASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 AL590627.1-203ENST00000421194 1026 ntBASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 PRSS29P-201ENST00000440800 595 ntBASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.66■■□□□ 1.06
SMC4Q9NTJ3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.65■■□□□ 1.06
SMC4Q9NTJ3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 PCDHA14-201ENST00000506751 2298 ntBASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.64■■□□□ 1.06
SMC4Q9NTJ3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 IGLL3P-201ENST00000412472 434 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 VN2R19P-201ENST00000442399 1052 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 SLC25A1P1-201ENST00000528351 927 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 AC091167.2-201ENST00000579581 588 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 AC013467.2-201ENST00000605472 835 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 ACTL9-202ENST00000612068 1252 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 HLA-A-202ENST00000376806 1854 ntBASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC4Q9NTJ3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 AC131009.4-201ENST00000624048 1740 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms