Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
VTA1Q9NP79 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 HLA-H-201ENST00000383620 1096 ntBASIC18.76■□□□□ 0.59
VTA1Q9NP79 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 AC004890.2-204ENST00000481968 304 ntBASIC18.76■□□□□ 0.59
VTA1Q9NP79 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 AC003101.2-201ENST00000612557 442 ntBASIC18.76■□□□□ 0.59
VTA1Q9NP79 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 NEFHP1-201ENST00000412845 2629 ntBASIC18.76■□□□□ 0.59
VTA1Q9NP79 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VTA1Q9NP79 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 CROCCP2-202ENST00000412962 2773 ntBASIC18.76■□□□□ 0.59
VTA1Q9NP79 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VTA1Q9NP79 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 FOXO1B-201ENST00000504678 1527 ntBASIC18.75■□□□□ 0.59
VTA1Q9NP79 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AC006277.1-201ENST00000624348 1610 ntBASIC18.75■□□□□ 0.59
VTA1Q9NP79 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AC027369.6-201ENST00000525520 931 ntBASIC18.75■□□□□ 0.59
VTA1Q9NP79 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VTA1Q9NP79 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTA1Q9NP79 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 AC100757.3-201ENST00000622361 1406 ntBASIC18.74■□□□□ 0.59
VTA1Q9NP79 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.74■□□□□ 0.59
VTA1Q9NP79 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTA1Q9NP79 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms