Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AC018845.2-201ENST00000568326 409 ntBASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AC010507.1-201ENST00000633895 436 ntBASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AC007064.4-201ENST00000637740 555 ntBASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 TOP3BP1-201ENST00000420768 1380 ntBASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM39Q9HCM9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AC046158.3-201ENST00000624947 2558 ntBASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ACTL9-202ENST00000612068 1252 ntBASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AC004877.2-201ENST00000623941 599 ntBASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AC084018.2-201ENST00000613093 2607 ntBASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM39Q9HCM9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 AL513480.1-201ENST00000451731 511 ntBASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 AC023141.13-201ENST00000604991 943 ntBASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM39Q9HCM9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms