Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 GGT4P-201ENST00000623672 1708 ntBASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.5■■□□□ 1.03
SHANK3Q9BYB0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AL391069.4-201ENST00000609583 481 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AL109936.8-201ENST00000641772 604 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 KRT8P39-201ENST00000396270 1433 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC098859.1-201ENST00000502915 1238 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 USP32P1-208ENST00000506594 1164 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 AC004461.2-201ENST00000629517 803 ntBASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK3Q9BYB0 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC098614.1-201ENST00000368528 745 ntBASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC092337.1-201ENST00000568699 1129 ntBASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK3Q9BYB0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ELK1P1-201ENST00000485699 580 ntBASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 GLI4-203ENST00000517468 963 ntTSL 5 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 AC106886.1-201ENST00000568660 600 ntBASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SHANK3Q9BYB0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 ANKRD19P-201ENST00000338192 862 ntBASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 MIR4525-201ENST00000580000 75 ntBASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 MIR6805-201ENST00000615055 62 ntBASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms