Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.19■□□□□ 0.02
USB1Q9BQ65 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
USB1Q9BQ65 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AP002414.1-201ENST00000391405 1147 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 RNA5SP416-201ENST00000516838 111 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 SLC25A1P1-201ENST00000528351 927 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AC008667.4-201ENST00000607370 168 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AL139327.4-201ENST00000612362 153 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 AC107308.1-201ENST00000615897 301 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AC097637.2-201ENST00000624096 1997 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 AL645608.8-201ENST00000606034 2086 ntBASIC15.18■□□□□ 0.02
USB1Q9BQ65 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.18■□□□□ 0.02
USB1Q9BQ65 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
USB1Q9BQ65 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC005052.1-201ENST00000625181 2492 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC034105.1-201ENST00000563488 319 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC137695.1-201ENST00000604126 489 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AL353135.1-201ENST00000606729 504 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 AL034417.3-201ENST00000641100 1043 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 AC007326.2-201ENST00000624224 7579 ntBASIC15.17■□□□□ 0.02
USB1Q9BQ65 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
USB1Q9BQ65 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
USB1Q9BQ65 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms