Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
DEPDC4Q8N2C3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
DEPDC4Q8N2C3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
DEPDC4Q8N2C3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
DEPDC4Q8N2C3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 AC023824.1-201ENST00000562945 2975 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 IGHGP-201ENST00000390555 1178 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RNF126P1-202ENST00000569893 925 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CLEC4GP1-201ENST00000596555 870 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 LINC01711-201ENST00000598340 967 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 NPAP1P7-201ENST00000613027 823 ntBASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
DEPDC4Q8N2C3 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 AL450487.1-201ENST00000426799 995 ntBASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 AL390719.2-201ENST00000606993 987 ntBASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
DEPDC4Q8N2C3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
DEPDC4Q8N2C3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms