Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 AC091167.2-201ENST00000579581 588 ntBASIC16.49■□□□□ 0.23
VRK3Q8IV63 AC005412.3-201ENST00000580309 715 ntBASIC16.49■□□□□ 0.23
VRK3Q8IV63 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 HLA-A-202ENST00000376806 1854 ntBASIC16.48■□□□□ 0.23
VRK3Q8IV63 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AP002490.2-201ENST00000524791 560 ntBASIC16.48■□□□□ 0.23
VRK3Q8IV63 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AC096734.2-201ENST00000562054 433 ntBASIC16.48■□□□□ 0.23
VRK3Q8IV63 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AL671883.3-201ENST00000603274 991 ntBASIC16.48■□□□□ 0.23
VRK3Q8IV63 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 PCDHA14-201ENST00000506751 2298 ntBASIC16.48■□□□□ 0.23
VRK3Q8IV63 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.48■□□□□ 0.23
VRK3Q8IV63 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VRK3Q8IV63 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 RHOQP3-201ENST00000437982 621 ntBASIC16.47■□□□□ 0.23
VRK3Q8IV63 AL513480.1-201ENST00000451731 511 ntBASIC16.47■□□□□ 0.23
VRK3Q8IV63 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.47■□□□□ 0.23
VRK3Q8IV63 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 CYP2A7P1-201ENST00000595391 815 ntBASIC16.47■□□□□ 0.23
VRK3Q8IV63 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 AC079328.2-201ENST00000561241 3354 ntBASIC16.47■□□□□ 0.23
VRK3Q8IV63 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms