Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 SLC25A6P2-201ENST00000497974 877 ntBASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 OR7E14P-202ENST00000530490 1290 ntBASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 REXO1L3P-201ENST00000622202 1288 ntBASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 TOP3BP1-201ENST00000420768 1380 ntBASIC16.77■□□□□ 0.27
ZNF549Q6P9A3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 PI4KAP1-204ENST00000612579 1703 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 TNRC18P3-201ENST00000441896 2691 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AC079781.3-201ENST00000449110 356 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AC018712.1-201ENST00000455767 687 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AC006557.2-201ENST00000592985 1240 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AL121912.1-201ENST00000603683 238 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AC148477.8-201ENST00000624298 468 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AC006277.1-201ENST00000624348 1610 ntBASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ZNF549Q6P9A3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 FAM197Y8-203ENST00000450145 560 ntBASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AC073648.2-201ENST00000510116 352 ntBASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AC012640.2-201ENST00000561606 901 ntBASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 AC013467.2-201ENST00000605472 835 ntBASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
ZNF549Q6P9A3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms