Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.76■□□□□ 0.43
RNF43Q68DV7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF43Q68DV7 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF43Q68DV7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF43Q68DV7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF43Q68DV7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 LYSMD4-203ENST00000378904 2122 ntBASIC17.75■□□□□ 0.43
RNF43Q68DV7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 FLJ38576-201ENST00000623820 2459 ntBASIC17.75■□□□□ 0.43
RNF43Q68DV7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 PRSS29P-201ENST00000440800 595 ntBASIC17.75■□□□□ 0.43
RNF43Q68DV7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 AC108073.2-201ENST00000464002 357 ntBASIC17.75■□□□□ 0.43
RNF43Q68DV7 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 SNHG9-202ENST00000564014 471 ntBASIC17.75■□□□□ 0.43
RNF43Q68DV7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF43Q68DV7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RNF43Q68DV7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 PTCHD3P3-201ENST00000403073 906 ntBASIC17.74■□□□□ 0.43
RNF43Q68DV7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 RFPL4AP1-201ENST00000530883 850 ntBASIC17.74■□□□□ 0.43
RNF43Q68DV7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 AC092364.2-202ENST00000597012 1073 ntBASIC17.74■□□□□ 0.43
RNF43Q68DV7 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RNF43Q68DV7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.74■□□□□ 0.43
RNF43Q68DV7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RNF43Q68DV7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RNF43Q68DV7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RNF43Q68DV7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms