Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.55■□□□□ 0.72
SF3A1Q15459 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.55■□□□□ 0.72
SF3A1Q15459 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SF3A1Q15459 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.55■□□□□ 0.72
SF3A1Q15459 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SF3A1Q15459 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.55■□□□□ 0.72
SF3A1Q15459 AC018695.7-201ENST00000624587 2492 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 TUBB8P12-201ENST00000308911 1335 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 TUBB7P-202ENST00000428444 1305 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 TUBB8P7-204ENST00000567960 1332 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 HCG4P8-203ENST00000443049 980 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.54■□□□□ 0.72
SF3A1Q15459 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 MIR3652-201ENST00000579335 131 ntBASIC19.54■□□□□ 0.72
SF3A1Q15459 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SF3A1Q15459 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.54■□□□□ 0.72
SF3A1Q15459 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SF3A1Q15459 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.53■□□□□ 0.72
SF3A1Q15459 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SF3A1Q15459 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 AP002490.2-201ENST00000524791 560 ntBASIC19.53■□□□□ 0.72
SF3A1Q15459 DUX4L17-201ENST00000557360 1267 ntBASIC19.53■□□□□ 0.72
SF3A1Q15459 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SF3A1Q15459 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.53■□□□□ 0.72
SF3A1Q15459 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.53■□□□□ 0.72
SF3A1Q15459 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.53■□□□□ 0.72
SF3A1Q15459 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SF3A1Q15459 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.52■□□□□ 0.72
SF3A1Q15459 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SF3A1Q15459 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms