Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.12■□□□□ 0.01
CLRN1P58418 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLRN1P58418 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.12■□□□□ 0.01
CLRN1P58418 PI4KAP1-204ENST00000612579 1703 ntBASIC15.12■□□□□ 0.01
CLRN1P58418 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 AC004870.1-201ENST00000315132 882 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 RPS2P1-201ENST00000434010 821 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 FAM197Y8-203ENST00000450145 560 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.11■□□□□ 0.01
CLRN1P58418 AF186996.4-201ENST00000467186 377 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 RNPS1P1-201ENST00000507437 918 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.11■□□□□ 0.01
CLRN1P58418 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.11■□□□□ 0.01
CLRN1P58418 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 AL121912.1-201ENST00000603683 238 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
CLRN1P58418 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 AL691432.3-201ENST00000621860 400 ntBASIC15.11■□□□□ 0.01
CLRN1P58418 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
CLRN1P58418 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLRN1P58418 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CLRN1P58418 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.11■□□□□ 0.01
CLRN1P58418 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CLRN1P58418 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 AGGF1P2-201ENST00000426656 2106 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.1■□□□□ 0.01
CLRN1P58418 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 RNF216P1-203ENST00000404404 2427 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN1P58418 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.1■□□□□ 0.01
CLRN1P58418 PTCHD3P3-201ENST00000403073 906 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 ELK2BP-201ENST00000415014 1224 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 AL450487.1-201ENST00000426799 995 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN1P58418 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.1■□□□□ 0.01
CLRN1P58418 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.1■□□□□ 0.01
CLRN1P58418 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 MIR1199-201ENST00000621445 119 ntBASIC15.1■□□□□ 0.01
CLRN1P58418 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CLRN1P58418 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 AC006504.4-201ENST00000592118 1568 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms