Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 TOP3BP1-201ENST00000420768 1380 ntBASIC17.66■□□□□ 0.42
HDAC4P56524 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HDAC4P56524 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.66■□□□□ 0.42
HDAC4P56524 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 IGHV3-22-201ENST00000520721 359 ntBASIC17.66■□□□□ 0.42
HDAC4P56524 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 AC107918.2-201ENST00000530817 355 ntBASIC17.66■□□□□ 0.42
HDAC4P56524 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.66■□□□□ 0.42
HDAC4P56524 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HDAC4P56524 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC4P56524 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC4P56524 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.65■□□□□ 0.42
HDAC4P56524 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
HDAC4P56524 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.65■□□□□ 0.42
HDAC4P56524 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 AL513477.1-201ENST00000602865 2407 ntBASIC17.65■□□□□ 0.42
HDAC4P56524 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HDAC4P56524 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
HDAC4P56524 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 AC093909.1-201ENST00000504731 1122 ntBASIC17.65■□□□□ 0.42
HDAC4P56524 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.65■□□□□ 0.42
HDAC4P56524 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.65■□□□□ 0.42
HDAC4P56524 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.65■□□□□ 0.42
HDAC4P56524 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC4P56524 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC4P56524 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
HDAC4P56524 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.64■□□□□ 0.42
HDAC4P56524 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
HDAC4P56524 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC4P56524 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms