Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
LIMK1P53667 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.64■□□□□ 0.26
LIMK1P53667 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LIMK1P53667 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 AC100757.3-201ENST00000622361 1406 ntBASIC16.64■□□□□ 0.25
LIMK1P53667 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.64■□□□□ 0.25
LIMK1P53667 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.64■□□□□ 0.25
LIMK1P53667 TP53TG3HP-202ENST00000569755 579 ntBASIC16.64■□□□□ 0.25
LIMK1P53667 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 AC017083.2-201ENST00000608069 979 ntBASIC16.64■□□□□ 0.25
LIMK1P53667 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.64■□□□□ 0.25
LIMK1P53667 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.64■□□□□ 0.25
LIMK1P53667 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.64■□□□□ 0.25
LIMK1P53667 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIMK1P53667 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 AC022211.2-201ENST00000585075 2527 ntBASIC16.63■□□□□ 0.25
LIMK1P53667 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIMK1P53667 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 AC098614.1-201ENST00000368528 745 ntBASIC16.63■□□□□ 0.25
LIMK1P53667 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.63■□□□□ 0.25
LIMK1P53667 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.63■□□□□ 0.25
LIMK1P53667 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMK1P53667 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIMK1P53667 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LIMK1P53667 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMK1P53667 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.63■□□□□ 0.25
LIMK1P53667 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 PHGDH-209ENST00000641074 1780 ntBASIC16.63■□□□□ 0.25
LIMK1P53667 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
LIMK1P53667 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMK1P53667 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMK1P53667 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMK1P53667 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIMK1P53667 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMK1P53667 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMK1P53667 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMK1P53667 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMK1P53667 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
LIMK1P53667 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMK1P53667 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMK1P53667 RPS2P32-201ENST00000439199 892 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms