Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.46■□□□□ 0.39
NEK3P51956 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.46■□□□□ 0.39
NEK3P51956 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.46■□□□□ 0.39
NEK3P51956 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 POLD2P1-201ENST00000511220 997 ntBASIC17.46■□□□□ 0.39
NEK3P51956 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.46■□□□□ 0.39
NEK3P51956 TERC-201ENST00000602385 541 ntBASIC17.46■□□□□ 0.39
NEK3P51956 AC027601.4-201ENST00000611259 610 ntBASIC17.46■□□□□ 0.39
NEK3P51956 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.46■□□□□ 0.39
NEK3P51956 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.46■□□□□ 0.39
NEK3P51956 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NEK3P51956 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.46■□□□□ 0.39
NEK3P51956 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.46■□□□□ 0.38
NEK3P51956 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.38
NEK3P51956 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
NEK3P51956 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
NEK3P51956 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 MIR940-201ENST00000401276 94 ntBASIC17.45■□□□□ 0.38
NEK3P51956 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.45■□□□□ 0.38
NEK3P51956 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.45■□□□□ 0.38
NEK3P51956 AC009947.1-201ENST00000444350 727 ntBASIC17.45■□□□□ 0.38
NEK3P51956 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
NEK3P51956 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 AC023511.2-201ENST00000618803 211 ntBASIC17.45■□□□□ 0.38
NEK3P51956 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NEK3P51956 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.45■□□□□ 0.38
NEK3P51956 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.45■□□□□ 0.38
NEK3P51956 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.44■□□□□ 0.38
NEK3P51956 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.44■□□□□ 0.38
NEK3P51956 AC078925.2-201ENST00000624013 1973 ntBASIC17.44■□□□□ 0.38
NEK3P51956 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.44■□□□□ 0.38
NEK3P51956 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.44■□□□□ 0.38
NEK3P51956 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.44■□□□□ 0.38
NEK3P51956 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.44■□□□□ 0.38
NEK3P51956 LINC00982-205ENST00000420957 435 ntBASIC17.44■□□□□ 0.38
NEK3P51956 MED15P5-201ENST00000423150 992 ntBASIC17.44■□□□□ 0.38
NEK3P51956 AL591424.1-201ENST00000442569 1213 ntBASIC17.44■□□□□ 0.38
NEK3P51956 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
NEK3P51956 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.44■□□□□ 0.38
NEK3P51956 RNF216P1-203ENST00000404404 2427 ntBASIC17.44■□□□□ 0.38
NEK3P51956 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
NEK3P51956 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NEK3P51956 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.44■□□□□ 0.38
NEK3P51956 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms