Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
PTPN9P43378 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN9P43378 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.53■□□□□ 0.4
PTPN9P43378 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.53■□□□□ 0.4
PTPN9P43378 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PTPN9P43378 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PTPN9P43378 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 KRT8P39-201ENST00000396270 1433 ntBASIC17.53■□□□□ 0.4
PTPN9P43378 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN9P43378 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PTPN9P43378 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
PTPN9P43378 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.52■□□□□ 0.4
PTPN9P43378 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
PTPN9P43378 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PTPN9P43378 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PTPN9P43378 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.52■□□□□ 0.4
PTPN9P43378 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
PTPN9P43378 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN9P43378 RHOQP3-201ENST00000437982 621 ntBASIC17.52■□□□□ 0.4
PTPN9P43378 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.52■□□□□ 0.4
PTPN9P43378 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN9P43378 AC096734.2-201ENST00000562054 433 ntBASIC17.52■□□□□ 0.4
PTPN9P43378 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.52■□□□□ 0.4
PTPN9P43378 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 MIR4515-201ENST00000584082 81 ntBASIC17.52■□□□□ 0.4
PTPN9P43378 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN9P43378 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.52■□□□□ 0.4
PTPN9P43378 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.52■□□□□ 0.4
PTPN9P43378 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.52■□□□□ 0.4
PTPN9P43378 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN9P43378 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN9P43378 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.52■□□□□ 0.39
PTPN9P43378 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN9P43378 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN9P43378 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN9P43378 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
PTPN9P43378 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.52■□□□□ 0.39
PTPN9P43378 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
PTPN9P43378 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.52■□□□□ 0.39
PTPN9P43378 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
PTPN9P43378 AC012569.1-201ENST00000591191 1524 ntBASIC17.52■□□□□ 0.39
PTPN9P43378 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN9P43378 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.52■□□□□ 0.39
PTPN9P43378 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN9P43378 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
PTPN9P43378 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PTPN9P43378 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTPN9P43378 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN9P43378 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTPN9P43378 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.51■□□□□ 0.39
PTPN9P43378 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.51■□□□□ 0.39
PTPN9P43378 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
PTPN9P43378 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.51■□□□□ 0.39
PTPN9P43378 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN9P43378 AC010507.1-201ENST00000633895 436 ntBASIC17.51■□□□□ 0.39
PTPN9P43378 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.51■□□□□ 0.39
PTPN9P43378 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN9P43378 AL671710.1-201ENST00000610245 2349 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms